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rs238901973 SNP Detail
Summary
  • ID
    rs238901973
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr2:60713890 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCTCTAGAG ATAAGAAAAT
    GTTAAATGAT AAAATTTAAA GAGATGGCAA AATAAATCTG ATACTAGTAG AATGTGCAAA
    TAATACTGAG AGGTATTAAG AGAACTGACC TTAAGACTTA AAATGAATCT AAGAATTAGC
    ATGCTGTTTA TAGTTTCACA TGAACTGCTT AAAAAGAAAA AACATAGACA TGTAGTACTT
    W
    AAAAAAAAGG AAACTTGAGT TCAAAAGCTC CAAATATGAA GTAGATCTAT AAGCCATTAT
    ACAAAGAAGA AAAGATTAAT AGTCCAACCT CAAAATAGGA TCACAGAAAC CCAAAAATTC
    AAACTTAAGG GAAATAGCTG GAATATGAAA CTCTGTATAT AACATACACA ATCAATTCTA
    GATAATCCAT GAGCAATTAT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ss354169619 MGP_WTSI_2_60721603 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
rs238901973 SNP A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss354169619 MGP_WTSI_2_60721603 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:60713890 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11682 CpG island 11682 1652 bp distal
Gm50617 predicted gene, 50617 within coordinates
Gm74812 predicted gene, 74812 1288 bp downstream
Rbms1 RNA binding motif, single stranded interacting protein 1 Intron
Noncoding-Transcript-Variant
Rr557732 regulatory region 557732 1586 bp distal
Rr557733 regulatory region 557733 971 bp distal
Rr557734 regulatory region 557734 297 bp proximal
Tssr24235 transcription start site region 24235 344 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory