rs238903689 SNP Detail

Summary

• ID
  rs238903689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:122613013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTCGGA TTGCACATAC
  GTAAAAGGCA GCCAACAGTT GCACATGTGT TGGTGTTGGG TCTGAAACAA AAAACCGAAG
  GGCAGGTAGA GAGGTCTGCT TTGTTCTGAG CGCCTGCCAT TTGCATTCCG TGGAGGAGAG
  AGGGTGATAA GTCCTGAGTA AATATGTTTT CCAGGGAAAC ATTTAAACTG GGGATCTCTT
  Y
  TTCCCTCTCG CTCCTAGGCC TCAAAGTGTT CCTTTCTGAG GGAAACGGAT TGTGGTGTTT
  GAGATTTCCC TGTGATTTGG GGTGGTGGGG GGGACCTTGT TACCTTCAGT TTTCTCTGCT
  TTCCTTCTTC CTTCCTGCCC CCTCCCCATT CCTTTGTGTG GATGCTGGAG GCTGGGGTAG
  GGTATTTCCT CAGGTCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392819992	MGP_WTSI_14_122774823	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	C	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238903689					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T	C	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392819992	MGP_WTSI_14_122774823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122613013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clybl	citrate lyase beta like			Intron
				Noncoding-Transcript-Variant
Gm5089	predicted gene 5089			within coordinates
Rr498386	regulatory region 498386			1629 bp distal
Rr498387	regulatory region 498387			777 bp distal
Tssr4535	transcription start site region 4535			182 bp downstream
Tssr127328	transcription start site region 127328			369 bp downstream
Tssr127329	transcription start site region 127329			350 bp downstream
Tssr127330	transcription start site region 127330			95 bp downstream
Tssr127331	transcription start site region 127331			194 bp upstream