rs238905489 SNP Detail

Summary

• ID
  rs238905489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG ATCTGAGCAA GCAGGGTTGA
  Y
  CAGAGCGAGC AGAGGTCCTA AAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910474	CHEV_6_113255198	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238905489					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282165 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1933 bp upstream
Cpgi17838	CpG island 17838	1112 bp proximal
Cpne9	copine family member IX	within coordinates
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	421 bp downstream
Gm67816	predicted gene, 67816	417 bp downstream
Rr399829	regulatory region 399829	1168 bp upstream
Rr636483	regulatory region 636483	331 bp proximal
Rr636484	regulatory region 636484	1443 bp proximal
Tssr58189	transcription start site region 58189	1746 bp upstream
Tssr58190	transcription start site region 58190	1956 bp upstream