rs238915346 SNP Detail

Summary

• ID
  rs238915346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47259314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT CCCCTCCAAG TCGCCTACCC
  Y
  GGGTCTGTCA CTCGGCCCGC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324335498	CHEV_13_47201206	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238915346					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47259314 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	508 bp upstream
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	342 bp proximal
Rr479040	regulatory region 479040	599 bp proximal
Tssr119626	transcription start site region 119626	246 bp downstream
Tssr119627	transcription start site region 119627	563 bp upstream
Tssr119628	transcription start site region 119628	575 bp upstream
Tssr122369	transcription start site region 122369	461 bp upstream
Tssr122370	transcription start site region 122370	314 bp upstream
Tssr122371	transcription start site region 122371	216 bp upstream
Tssr122372	transcription start site region 122372	136 bp upstream
Tssr122373	transcription start site region 122373	91 bp upstream
Tssr122374	transcription start site region 122374	within coordinates
Tssr122375	transcription start site region 122375	263 bp downstream
Tssr122376	transcription start site region 122376	281 bp downstream
Tssr122377	transcription start site region 122377	306 bp downstream
Tssr122378	transcription start site region 122378	338 bp downstream
Tssr122379	transcription start site region 122379	371 bp downstream
Tssr122380	transcription start site region 122380	384 bp downstream