rs238921765 SNP Detail

Summary

• ID
  rs238921765
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25014481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTAA AGAATTAAAA
  TTTCCTCTTA AATCATTAAA ATTCTTTTTA GGTAATATTA TCTTTCTAAA AGTCACTGTC
  AAATGCTGTC CTTAGTTTTG AAATATTTCC TATTGGAAAA CATTAAATAT ATTTACCTAA
  GGGTTATTTC CTATTTTTTT GACACTTTAT GAACATAGTT AAAAAATTCT AAGAGGGGGC
  R
  TGTTCAGGAA AAAGATTTCA AATGCCTGTT GTTGACCAAA ATTTATATTT CATGCCCAAA
  TTCTTTTTAA ATTTCCAAGT ATTTTTTCTT AATCAGAAAA ATAGACATGC GTGCATTAAA
  ACATTTATTA AAAAGTCTGC AGCAAGTTCT AAGGTTAAGT GTCTTTCTAC TCTGACAATA
  CCACGCACTG GACTTCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324298721	CHEV_13_24922367	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238921765					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25014481 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	613 bp proximal
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	948 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1181 bp upstream
Tssr118970	transcription start site region 118970	1163 bp upstream
Tssr118971	transcription start site region 118971	1202 bp upstream
Tssr121812	transcription start site region 121812	824 bp downstream
Tssr121813	transcription start site region 121813	839 bp downstream
Tssr121814	transcription start site region 121814	855 bp downstream
Tssr121815	transcription start site region 121815	911 bp downstream
Tssr121816	transcription start site region 121816	1090 bp downstream