rs238926070 SNP Detail

Summary

• ID
  rs238926070
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69816535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCTTTC TCTGGGTTCC
  AGCCAGTAGA AATAAAGGTG TCCCCCCTTC ATGAGGTTCA CTCTCTGTGT GGAAGGAGTC
  TGAAATCATC GCCACCTGAG CTCTCTTCAC AGGCTGTCTG TCAGCGACTT AGAGACCAGG
  GCCTGGGTAC TTTGTGACAG CAGAGTTCTG AGAAGACTGG CTAGGGTGAG GAAATGCTGA
  S
  GGGGTTGAGT TAGACGAGCT CAGCCTTCAA GGCTCTAGTT AAGTATCCTT TCCTGAAGAG
  TTCTCCCAAC TGTGTCTGTA CCCCTGTGTC AGAATCCCAG ATAGCTCAGA TAGCTCTCTC
  TGACAGTATT AAGTAGTTAG TAATGGCTAC TGTGTAATCA GTAACTATTT TCACTTAGCC
  ATTTAGTGTT CTCTGGTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085537	CHEV_12_70870748	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238926070					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69816535 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467133	regulatory region 467133	1970 bp distal
Tssr116525	transcription start site region 116525	454 bp upstream
Tssr116526	transcription start site region 116526	19 bp upstream