rs238926939 SNP Detail

Summary

• ID
  rs238926939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGATTAA TATCCACCTA
  TAGGAAGGGT AACAGGGGCA GCTGGAATTA GTCACTGAAG GAGCTGTGAG GGTGGCACTA
  GTTGTGAGGT AGGGGACTCG TTAAGACACT GCCAAGAGCC CTTAAACACT CAAGAAGCAC
  TTAAACCATA AGTGGAGGGG CAGAATGGGA GAGAAGAGAG AAAGACAGAC TAGGATTTGC
  R
  TCTTCCTGGA GGTCCTCCCA GATTCGACCT CAGCGCTCTG TGGGAGGTGA GGATGCTGTA
  GGCTTTATCA GTGTATCCTC ACCTGTAATG GACTGACTCA TTCCAGTGTG GGCTGGGTGC
  CTCCTGTTCC TGCAAAGTCA TGGACAAACC CAGGTAGGAG AAGAGGCTGC CCTGCATCTT
  GTCCCTGCAG CATCTCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408105	CHEV_17_48486318	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238926939					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654021 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1774 bp downstream
Rr335233	regulatory region 335233	821 bp distal
Rr335234	regulatory region 335234	20 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	576 bp downstream
Tssr145094	transcription start site region 145094	548 bp downstream
Tssr145095	transcription start site region 145095	500 bp downstream
Tssr145096	transcription start site region 145096	467 bp downstream
Tssr145097	transcription start site region 145097	508 bp upstream
Tssr145098	transcription start site region 145098	835 bp upstream
Tssr145099	transcription start site region 145099	1487 bp upstream
Tssr145100	transcription start site region 145100	1516 bp upstream
Tssr145101	transcription start site region 145101	1553 bp upstream
Tssr145102	transcription start site region 145102	1652 bp upstream
Tssr148525	transcription start site region 148525	1697 bp downstream