rs238927317 SNP Detail

Summary

• ID
  rs238927317
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115436597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGATACCG CTGCCTTTTG
  AAGTCTCTTT TTATATATTT TGTGATTTAC TTGGGCAATG GATGGAACTT GCTGTGGCTG
  CTGTTTACCA TCGCATTGGG CTCTGCAGTT TGGGAAGGCA AAAGGCAGGT CCGCGGTCGC
  CCTCTCCTGG TGAAGCCGCG GAACTTCGGA GAGGAGATCT GAGAAGATTA ATTTTGTTTG
  K
  TTCAGCAACT TTTTTTATTA AAGTTTACCC CCTTAAATAT ACTCATCAAG CTTTAACATT
  AGCCAGAGTC TCTTGGAGGA CTCCTAAAAG CTAGAAGCCT CGGTTCCACC CACAGAGTTT
  CCACTGCGTC TTGGGTGGAG CACAATAATT TGCATTTCTA GCGAGTTCCC AGGCAAGTTG
  GCAAAAGCAC TACTCTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892526	CHEV_3_115345866	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238927317					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115436597 () rs orientation: forward

Symbol	Name	Function Class
Gm40124	predicted gene, 40124	1352 bp upstream
Rr367536	regulatory region 367536	510 bp downstream
Rr367537	regulatory region 367537	within coordinates
Rr397953	regulatory region 397953	1544 bp upstream
Rr583561	regulatory region 583561	1409 bp distal
Rr583562	regulatory region 583562	862 bp distal
Rr583563	regulatory region 583563	46 bp distal
Rr583564	regulatory region 583564	139 bp proximal
Rr583565	regulatory region 583565	1030 bp proximal
Rr583566	regulatory region 583566	1972 bp proximal
Tssr35264	transcription start site region 35264	1417 bp upstream
Tssr35265	transcription start site region 35265	1394 bp upstream