rs238934395 SNP Detail

Summary

• ID
  rs238934395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTACCCC TGGGTCCCTG
  GGTGCGGGTC CCTGCGGTGC CAGAGACACC TGCCTGCCAG AAATCCACAA TCTCACTAAA
  TTCTTCTAGG CCAACTTTTT TCACCTTAGG AAAATTATTC CTGTGTGTTC GATAGGCCTG
  CAATATATCT TCAATCCTTT AATCTAAAAA AAGTTAAAGG CCTTATTAAT TTGAAGAAGA
  W
  GATGATGATG ATAATAATAA CAATAATATT TTATGAGTTC TGTGATGTAT TTCTGATTTT
  CCGTGTTGTT GAGGATCTGG CTACTCGTTT AAAACTAATT ATCATGTAAT TTTAGTATAT
  TGCTTTAGTA TTACCCTTAC CTCATAGGTA CCCTACATGC AAGTCAGAAT TTCTTTTTGG
  TGTAGTTTAA AAATAAATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745618	MGP_WTSI_15_40488118	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238934395					SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745618	MGP_WTSI_15_40488118	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	346 bp distal
Gm63080	predicted gene, 63080	420 bp upstream
Rr406269	regulatory region 406269	1294 bp proximal
Rr501588	regulatory region 501588	1527 bp distal
Rr501589	regulatory region 501589	964 bp distal
Rr501590	regulatory region 501590	463 bp distal
Rr501591	regulatory region 501591	919 bp proximal
Tssr4586	transcription start site region 4586	1270 bp downstream
Tssr131170	transcription start site region 131170	1681 bp downstream
Tssr131171	transcription start site region 131171	1651 bp downstream
Tssr131172	transcription start site region 131172	1568 bp downstream
Tssr131173	transcription start site region 131173	1518 bp downstream
Tssr131174	transcription start site region 131174	1490 bp downstream
Tssr131175	transcription start site region 131175	1347 bp downstream
Tssr131176	transcription start site region 131176	1306 bp downstream
Tssr131177	transcription start site region 131177	1251 bp downstream
Tssr131178	transcription start site region 131178	1215 bp downstream
Tssr131179	transcription start site region 131179	1614 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates