rs238937990 SNP Detail

Summary

• ID
  rs238937990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125873428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGGTGT AAAGTCAGGT
  AGGAGGTGAG CAGACAGGCT GGGGAAGGCA GGATTCAGAA CACAGAGCCC TATAGAAGTT
  TCTTTGTTCG TTTATTTATC CATTCATTGC AACATCTACC GTGTCTGAAG CTCCAGCCCT
  GGAGTTTGGG GCTTCCCCTC ATCTTTTCCT GATGATCAGG CTTCAGATCC TTGGGCTGTT
  Y
  TGTTTGTCCA GACCATGTCA GGACCAGCTG CCCAACCCTT GACCCCTTGT CCCTGTGACA
  CCTGATTCCC CAGATCAGAC CTGAGCAGCT GATACCTTCC CATCACTACT GCCTGGACTC
  CTCTCTGATG CTGGCTTTGC CCCATGAGTA CAGATGTAGC CTGGGTCAGC ACTCTTGCAG
  ATCCCCCCTG CAGACTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373065230	MGP_WTSI_7_133417770	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	C	T	T	T	C	C	T	C	T	T	C	C	C	T	C	C	C	T	T	T	C	T	C	C	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238937990					SNP	T	C	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	C	T	C	T	T	T	C	C	T	C	T	T	C	C	C	T	C	C	C	T	T	T	C	T	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373065230	MGP_WTSI_7_133417770	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125873428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	932 bp distal
Rr655453	regulatory region 655453	1627 bp distal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1832 bp downstream
Tssr69003	transcription start site region 69003	1813 bp downstream
Tssr69004	transcription start site region 69004	1801 bp downstream
Tssr69005	transcription start site region 69005	1782 bp downstream
Tssr69006	transcription start site region 69006	1764 bp downstream
Tssr69007	transcription start site region 69007	1732 bp downstream
Tssr69008	transcription start site region 69008	1669 bp downstream
Tssr69009	transcription start site region 69009	1647 bp downstream
Tssr69010	transcription start site region 69010	1461 bp downstream
Tssr69011	transcription start site region 69011	1398 bp downstream