rs238939359 SNP Detail

Summary

• ID
  rs238939359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATCCTGT CTAGAAACAA
  GTACTGCAGG GGCTGAGAGA GTATGCTAGG AATATTCTGG AAGCTTTTAG CAGCTGGACA
  ACAAGACTAG GTCTCATCAG AGTGGATGGT GACTGGTGGG AGATCCGGAA GCCTCACACA
  AGGGCTGAGG CTAGAAAAGA GCCCATCTGA CCCCACCTGC ACCAGGGGCC TGGGCAGGGT
  R
  GGCCACTGAG TCATGAGTAG CTGCCCCACC CCCACCCTGC GCAGTGGACC CTCTGCAGAT
  GTCTCTCCTG AACTGAGAAA AGCAAGTGTT GGTTACTTCT CTCTAGCTGT GGGGAAAAAA
  TAAATACCAA AGCAAGGTAA ATTTGTTCTG GCTTAGTGTT CAAGGATACA GCCCAGCTTC
  CGGTGGGGTT ATCTGCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366861074	MGP_WTSI_5_137168641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238939359					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366861074	MGP_WTSI_5_137168641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721625 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	229 bp downstream
Myl10	myosin, light chain 10, regulatory	375 bp upstream
Rr127468	regulatory region 127468	625 bp distal
Rr127469	regulatory region 127469	176 bp proximal
Tssr49256	transcription start site region 49256	1242 bp downstream
Tssr49257	transcription start site region 49257	49 bp upstream
Tssr49258	transcription start site region 49258	185 bp upstream
Tssr49259	transcription start site region 49259	248 bp upstream
Tssr49260	transcription start site region 49260	313 bp upstream
Tssr49261	transcription start site region 49261	825 bp upstream
Tssr49262	transcription start site region 49262	843 bp upstream
Tssr49263	transcription start site region 49263	886 bp upstream
Tssr49264	transcription start site region 49264	896 bp upstream
Tssr49265	transcription start site region 49265	1350 bp upstream
Tssr49266	transcription start site region 49266	1372 bp upstream
Tssr49267	transcription start site region 49267	1442 bp upstream