rs238941169 SNP Detail

Summary

• ID
  rs238941169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114859235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGGAGG CAGATGTGGT
  TGGGGGTTCT GGGAGGAAAA TGGAGGGGTA TGGAAGGTGG GTGTTATTGT AATCACTTAC
  AATAGATACA TTGTACTCAT GTGTGACATT AGGGAAGGAT ATATGAATTG TAAAGCCCAT
  CATTAAGTTT GTGTGTCAGA CACTATGCCA GTCTTTGGAG AAGCCTGCCT TGCTCCCCTC
  Y
  CCCCCCCCCC CCCCAGTCTC AGTTCCGGCC AGCCTCCCCG CTCAGCTCAC ACTCTCTCTC
  AGCTCTGTGT GAGGTGATGG AGCTCTCCCA TTGCTAGGCA GTTCATCCCT GAAAACAGGT
  GCAGGTGTCA GACAGCAGCA TCTACCTACA CTGGGGACCT GCCACCCTCC TGGGACTTAG
  TAGGTGTGTG CTTCTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss376103514	MGP_WTSI_8_116656395	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs238941169					SNP	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376103514	MGP_WTSI_8_116656395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114859235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	955 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1079 bp upstream
Rr401147	regulatory region 401147	914 bp upstream
Rr670351	regulatory region 670351	1504 bp distal
Rr670352	regulatory region 670352	1009 bp distal
Rr670353	regulatory region 670353	415 bp proximal
Rr670354	regulatory region 670354	1158 bp proximal
Tssr79531	transcription start site region 79531	1074 bp upstream
Tssr79532	transcription start site region 79532	1106 bp upstream
Tssr79533	transcription start site region 79533	1140 bp upstream
Tssr83006	transcription start site region 83006	1485 bp upstream
Tssr83007	transcription start site region 83007	900 bp upstream
Tssr83008	transcription start site region 83008	891 bp upstream