rs238941841 SNP Detail

Summary

• ID
  rs238941841
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117056366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTCAA GCAATAGGTG
  GGGGAGAAGA GGCTGGCCAG GGACATGGGT TGAGCTCTGT AACCATGACT TGCTTCTCAC
  CCCCCCCCCC GCCCTCCAGC CCCAAGGATA GACTGAAGGG CTTCCTGAGG CCACTGCTTC
  CCACTGTGCA GGAGGCATAG AGAGGACCCC CACAGCATCA TCTGTATAAG ACACACACTG
  G
  ATCCTGCAGC ATCGTCTGTA TAAGACACAC ATGACCCCAT AGCATCATCT GTATAAGACA
  CACACTGGAC CCCACAGTAT TGCCTGTATA AGACACACAC TTGATCCTCA GCCTCTTCCT
  TTCGTTGTCT CAGGTGTGTG GGGCTGTCTC CACGGGAGCG ATGGCTAGGT CCGTGTCTGT
  TGACTGCAGA TCTGGAGTCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss384869743	MGP_WTSI_11_117026854	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs238941841					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384869743	MGP_WTSI_11_117026854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117056366 () rs orientation: forward

Symbol	Name	Function Class
D11Mit103	DNA segment, Chr 11, Massachusetts Institute of Technology 103	1779 bp proximal
Tssr112020	transcription start site region 112020	177 bp downstream