rs238942597 SNP Detail

Summary

• ID
  rs238942597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74592219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTCTGA GGATCTGTCC
  CTCCCCAAGC TAGAGTACAG ACCAGGACAA AGTGGGTGTT GTAAGTGTAA CCAGTATGCG
  GGGAAGGTTC TTCTTCCGGT CCTTTGAAGC TACCCTAATA GGCAGTGAAT TCCTTGTCTC
  TCCAGAGACC CCAGGCACTC GCTTTGCCAA AGCTCCTAGC TTCAGAAGTA AAACTGAAAA
  R
  GACCTGTGCT CTGGTCAGTG ACTACAGCGG ACCCACCCAG CTCAGCATGG GACAGTGGAG
  TGATGCTGAC CAGGGTATCT GGAAGGCCAT CAGCCCATCC ATCCCTGGGC TCCCTACCAG
  TCACTTGCAT ACAGGATTGT TACAGAGTCC TGGAGAGGAG AGACAGCCTG ACCTTGGGAC
  CTACCCCTAT GCCAAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394582805	MGP_WTSI_15_74550800	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238942597					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394582805	MGP_WTSI_15_74550800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74592219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7176	CpG island 7176	326 bp proximal
Gm28976	predicted gene 28976	1435 bp downstream
Rr504331	regulatory region 504331	1659 bp distal
Rr504332	regulatory region 504332	390 bp distal
Rr504333	regulatory region 504333	344 bp proximal
Rr504334	regulatory region 504334	626 bp proximal
Rr504335	regulatory region 504335	1307 bp proximal
Them6	thioesterase superfamily member 6	864 bp upstream
Tssr131582	transcription start site region 131582	823 bp upstream
Tssr131583	transcription start site region 131583	868 bp upstream
Tssr131584	transcription start site region 131584	1192 bp upstream
Tssr131585	transcription start site region 131585	1321 bp upstream
Tssr131586	transcription start site region 131586	1327 bp upstream