rs238944049 SNP Detail

Summary

• ID
  rs238944049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175458927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGCAA ACCACTGCAA
  GATGCTTGTC TCTGGACAAG AGAGATAGGC TCCTAAAGAG ACAGAATCTA CAATATTACC
  CTTCTTTGTA TGCCCTTGCC AAATCTTTAA CTTCATTCTG TGTGATATAT AGCATACTAT
  AATGACTCAG CCTTTTTCTA GCACGTCTAA CATACTCTCC TACAGGGGCA CTATCGGGTG
  S
  TGTTTCCTTC CAGTCCCTAC CCAAAGAAAT GCCATTTGTG TTCTCATCAG AAATTGGAAA
  AACCAATAAA TCTTCATTGA TGCTCTTATT TTATTTTAAT CACAATACGA TCTAGAAAAG
  AAGCACAACT CACGAATAGG CCCCCAAACC AAGCACTATA CGTTTCAAAT GAAGTAGAGA
  TGTCAAAGTG ATGAGACACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352481891	MGP_WTSI_1_177561492	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238944049					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352481891	MGP_WTSI_1_177561492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175458927 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	832 bp upstream
Rr396618	regulatory region 396618	457 bp upstream
Tssr10313	transcription start site region 10313	607 bp upstream
Tssr10314	transcription start site region 10314	635 bp upstream
Tssr10315	transcription start site region 10315	654 bp upstream
Tssr10316	transcription start site region 10316	683 bp upstream
Tssr10317	transcription start site region 10317	703 bp upstream
Tssr10318	transcription start site region 10318	735 bp upstream
Tssr10319	transcription start site region 10319	743 bp upstream
Tssr10320	transcription start site region 10320	759 bp upstream
Tssr10321	transcription start site region 10321	780 bp upstream
Tssr10322	transcription start site region 10322	794 bp upstream
Tssr10323	transcription start site region 10323	808 bp upstream