rs238944877 SNP Detail

Summary

• ID
  rs238944877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAGTGTG TTTCTCTGGT
  TTATTTATTT GTTGTCGTCT TTACCAACGC CAGTGTCGCC GGGTCGGAAG GTATTGTCAG
  CCCCTCGCTG GCCCGCCTGC AGTCGCCTTT AGGAGCTAAG GCGTTGAGTC TCACCAGGGC
  CAGCACAGTG CCACCTTCCA CTGGGCTCGC CCCAGTTAGG ACTGCGAACC ACCCTGCCAG
  Y
  CCTTGCACTT TGCGCAGAGG AAATTAAAGT CTCCTCCAAA GAAAACCTAA GTAATTCAAA
  ATCACCGCAA TAGGACTGCT ATTGAGACGA ACCCAGCTGG TTTTGCAGTA CAGCTCGAGG
  GCATGCGTGT CTAAATAGAA ATTCCTTGTA AACTTGCTTA TTCTTTACAC TTTTAAGCAA
  TGGGAAATCT GGAGAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963802	MGP_WTSI_11_34647508	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238944877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963802	MGP_WTSI_11_34647508	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	within coordinates
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	200 bp downstream
Rr444978	regulatory region 444978	376 bp distal
Rr444979	regulatory region 444979	292 bp distal
Rr444980	regulatory region 444980	within coordinates
Rr444981	regulatory region 444981	1812 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	365 bp upstream
Tssr100930	transcription start site region 100930	234 bp downstream
Tssr100931	transcription start site region 100931	215 bp downstream
Tssr107398	transcription start site region 107398	410 bp upstream
Tssr107399	transcription start site region 107399	380 bp upstream
Tssr107400	transcription start site region 107400	343 bp upstream