rs238951704 SNP Detail

Summary

• ID
  rs238951704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:39834895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGTTTT ACTACTATCC
  AAAGAGCGGT GAAGCTGAGT GTGGCGGCAT GAATTTATAA TCCCAGCACT CAGAAGGCTG
  AGGTGGGTGG TTCTCTATGA ATTTGAGGCA AGCCTGGTTT ATGCGGCAAG TTCCAGGTCA
  GCCAAGGCCA CATAGTGAGA GCCCTTGTAT TAAAATAAAG TACTAAAAAG GGCAGCTGAG
  R
  ATCTGGGTAC AGATCAGCTG CAACTGCATG TGTGCTAAGT GGATAAGATC CTGGGTTCAG
  TTACAGCAAC AGCAACAACA ACAACAACAA TAATAATAAT AATGTCAAAA TAGCTGATGG
  TGTTGTTGGT AAATGATACC TTAAGGAAAC TTCTCAGAGA GGTGTCATGT CTGTGGTAGC
  AGGGGCAGCT CGGCTGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380111700	MGP_WTSI_10_39678705	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238951704					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380111700	MGP_WTSI_10_39678705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39834895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	788 bp proximal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	within coordinates
Rr214610	regulatory region 214610	295 bp distal
Rr224689	regulatory region 224689	305 bp proximal
Rr227431	regulatory region 227431	1496 bp distal
Rr401837	regulatory region 401837	1271 bp upstream
Tssr97348	transcription start site region 97348	1245 bp downstream
Tssr97349	transcription start site region 97349	1273 bp downstream
Tssr97350	transcription start site region 97350	1296 bp downstream
Tssr97351	transcription start site region 97351	1344 bp downstream