rs238956074 SNP Detail

Summary

• ID
  rs238956074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20782654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTTAT TACTGATAGT
  AGCGTGCCTT AATTTCTTCA TCAGACATGA TAATAATTAC TACGATGATC CTATCTTGAA
  TTACTGTGAA GATTAATAAA TTGGTTCACA CACCTTCCCC AGAAGAACAC TCAGCACATT
  CTAAGCAACA GTTTTGAGTG TCTGCTGTTG ACCAAGAGCT GAGAATTAGC AGGGGCATTG
  Y
  TGAAATTACA TTGTAGCGAG GAGAGGCAGA CATAAGCAAA CTTGCAAGTA TATAGGTAGT
  AAGACAGAAA AATAAGGCGG GGAGGAGGAG AGTGCAGGAT GATGCTATTA AAGTAGGGTA
  GTCTGGGAAA GTGACATTGA GAATTCTGAA GGAGGGAGGG AGAAAGGGAG GGAGGAAGGG
  AGGGACAAAG GGAGGGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382653366	MGP_WTSI_11_20732657	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	T	C	T	T	T	C	C	T	T	C	C	T	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238956074					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C	T	C	C	C	C	T	C	T	T	T	C	C	T	T	C	C	T	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382653366	MGP_WTSI_11_20732657	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20782654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	974 bp distal
Gm12037	predicted gene 12037	712 bp upstream
Lgalsl	galectin like	1598 bp upstream
Rr443483	regulatory region 443483	1258 bp distal
Rr443484	regulatory region 443484	723 bp distal
Rr443485	regulatory region 443485	454 bp distal
Tssr3438	transcription start site region 3438	1853 bp upstream
Tssr107046	transcription start site region 107046	1601 bp upstream
Tssr107047	transcription start site region 107047	1580 bp upstream
Tssr107048	transcription start site region 107048	1465 bp upstream
Tssr107049	transcription start site region 107049	1435 bp upstream
Tssr107050	transcription start site region 107050	1389 bp upstream
Tssr107051	transcription start site region 107051	1322 bp upstream