rs238958812 SNP Detail

Summary

• ID
  rs238958812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12568465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCCCAC ACCACCCTGC
  CCAGACCACA CAACCCTGCC CACTCTACTA ATCTGGACGC AAACGCCTGT CCTCTCATGG
  AAATTTGAGT ACTTTTAATT CCGATGCCTA ATGGCTTTCT GTTTCTACAG TTACTCCTTT
  CTTCCTCTCC CTTTAAGGGT ACCGGTGAAA CTTCAGTAAG ATTGCATCCT TTTCTCCTTC
  Y
  CCACAGTAAA CTCCGTTAAA TGACTTTGTC TTCTCTTGCC TCCGACCCAC AGACAGCCCC
  AATCCGGATT CCCTCCCCCT CTACACTAGT AGAGCCGTAG GTTCCATCTG TCCCCTCGTC
  CCGCCTTCCT TGCTCTGCTA CGCGGCGTGC CTCGCTCAGC CGACCTAACA CCAGCACTTC
  CGGCCCACCC CCTTGCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106495	CHEV_7_13419887	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238958812					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12568465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	13 bp proximal
Rr642383	regulatory region 642383	within coordinates
Rr642384	regulatory region 642384	387 bp proximal
Rr642385	regulatory region 642385	455 bp proximal
Rr642386	regulatory region 642386	956 bp proximal
Tssr64479	transcription start site region 64479	205 bp upstream
Tssr64480	transcription start site region 64480	435 bp upstream
Tssr64481	transcription start site region 64481	710 bp upstream
Tssr64482	transcription start site region 64482	1412 bp upstream
Zfp110	zinc finger protein 110	223 bp upstream