rs238962062 SNP Detail

Summary

• ID
  rs238962062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGTCG TGGGAGTCTA
  GTCTATAACC TGTACACAAT AAAAGGACAA TATGACAGAC TTGTGGAGAC CCCACCTGAA
  GTTCGACCTA GGAGGAGGGA CGGAGTGGAT GGGGAGGACT TCTCGGCTGG GGAAGGAAGC
  TTAAAGTTTC CATGTGTGGG AGAGGTATCC TATTCTCAAA CCCGCTTGCA GAAATCCCCG
  Y
  GATTTTCTTC AAAAACGCTT ACAGCACCTG TCTCCAGGCT GCCTGCCCTT CGCTTTGAAT
  TCATTCTTTA GTTCAAGAGG AATGTCTGAG CTGGACTCAG CCAGCACTGT GTTCTGCACT
  GTCACAAGCC AAGGGCTACA AACGTAGCCT TTCTCCTGGA TGAAGCCTCG GAGGCCCAGA
  GAAGCTAAGT GATTGGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520429	MGP_WTSI_4_140981372	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238962062					SNP	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520429	MGP_WTSI_4_140981372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	379 bp proximal
Gm70191	predicted gene, 70191	144 bp upstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	147 bp downstream
Rr603759	regulatory region 603759	155 bp distal
Rr603760	regulatory region 603760	within coordinates
Rr603761	regulatory region 603761	837 bp proximal
Rr603762	regulatory region 603762	1347 bp proximal
Tssr40063	transcription start site region 40063	1448 bp downstream
Tssr40064	transcription start site region 40064	1387 bp downstream
Tssr40065	transcription start site region 40065	1360 bp downstream
Tssr40066	transcription start site region 40066	1256 bp downstream
Tssr40067	transcription start site region 40067	1202 bp downstream
Tssr40068	transcription start site region 40068	1147 bp downstream
Tssr40069	transcription start site region 40069	1020 bp downstream
Tssr40070	transcription start site region 40070	926 bp downstream
Tssr40071	transcription start site region 40071	909 bp downstream
Tssr40072	transcription start site region 40072	864 bp downstream
Tssr40073	transcription start site region 40073	839 bp downstream
Tssr40074	transcription start site region 40074	812 bp downstream
Tssr40075	transcription start site region 40075	788 bp downstream
Tssr40076	transcription start site region 40076	772 bp downstream
Tssr40077	transcription start site region 40077	752 bp downstream
Tssr40078	transcription start site region 40078	952 bp upstream
Tssr44315	transcription start site region 44315	1383 bp upstream
Tssr44316	transcription start site region 44316	1285 bp upstream
Tssr44317	transcription start site region 44317	1257 bp upstream
Tssr44318	transcription start site region 44318	857 bp upstream
Tssr44319	transcription start site region 44319	111 bp downstream