rs238962333 SNP Detail

Summary

• ID
  rs238962333
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111504419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC CGCGAAGGCC TCTGGGAAGG
  T
  CGGAGTTGGG GGGGGGAAGG GAAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324159944	CHEV_12_112776196	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238962333					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111504419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	116 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	31 bp upstream
Gm60631	predicted gene, 60631	534 bp downstream
Rr403512	regulatory region 403512	within coordinates
Tssr115317	transcription start site region 115317	1939 bp downstream
Tssr115318	transcription start site region 115318	1874 bp downstream
Tssr115319	transcription start site region 115319	780 bp downstream
Tssr115320	transcription start site region 115320	164 bp upstream
Tssr115321	transcription start site region 115321	279 bp upstream
Tssr115322	transcription start site region 115322	346 bp upstream
Tssr115323	transcription start site region 115323	484 bp upstream
Tssr115324	transcription start site region 115324	800 bp upstream
Tssr115325	transcription start site region 115325	834 bp upstream
Tssr115326	transcription start site region 115326	1449 bp upstream
Tssr117828	transcription start site region 117828	29 bp upstream
Tssr117829	transcription start site region 117829	594 bp downstream