rs238977563 SNP Detail

Summary

• ID
  rs238977563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144943498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGC
  AGTTTGCTGG AACAGAGAAG CTAGGATGTG GCAGGAAGCA GTTACAGAAG ACTGCCTATG
  GCCAAATCTA CAAAGAATAT TCCCCATGAC CACTGAAAGG GCAAGTACCA AATGGATCAA
  AACCAGCCTA GGCACACTTT GGTTTTGGTG ATGATAGCAT TTTAAGTGAA TTGACTGACA
  R
  CACTTAAAAT TTAGGGGTTG GCAGTTTAAA GCTCACCTAC CAGACACGTG GATTTTGATC
  CCTACCACTG GGATATAGAG AAGCAGAAAT CACAGACAGA ACGAATATCA GGGACAGTCC
  ATCTATCATC CTGCCTGACC TCTGTGGGCT TCTAAGTTCT CTAAGTTGGC GAGGAGTGAA
  TGCCAGACTA GCAGAGGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595820	MGP_WTSI_4_144806831	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238977563					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595820	MGP_WTSI_4_144806831	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144943498 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	1898 bp distal
Rr97118	regulatory region 97118	875 bp proximal
Rr103537	regulatory region 103537	499 bp distal
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr44494	transcription start site region 44494	1920 bp upstream
Tssr44495	transcription start site region 44495	1866 bp upstream
Tssr44496	transcription start site region 44496	1795 bp upstream
Tssr44497	transcription start site region 44497	1677 bp upstream
Tssr44498	transcription start site region 44498	1533 bp upstream
Tssr44499	transcription start site region 44499	1488 bp upstream
Tssr44500	transcription start site region 44500	1402 bp upstream
Tssr44501	transcription start site region 44501	1359 bp upstream
Tssr44502	transcription start site region 44502	1261 bp upstream
Tssr44503	transcription start site region 44503	1149 bp upstream
Tssr44504	transcription start site region 44504	1083 bp upstream