rs238978452 SNP Detail

Summary

• ID
  rs238978452
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:92899944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGAAGGTG TTGGAGAGAC TCCTTAGGAT
  CCGGAGACGG TAAGATAACA CAACATGTCA GGAAACACTG GCACTTCAAG AAACGACTGG
  GTGTTGAAAG AAACGCCCTA GAAACGGAAC CGGTTAGAGC AAAAAGCTGG GGGGTGGGGG
  K
  GGGGGGGAGG GCTGTTTCGG AAACACTGTG CAATCTGTAA TTCTAAAGCT CCCGAGGGAG
  GGGTTAGTAA GGTTAATCCC ATCGTTTTTT TATCTCCCTC CCCCACAGGG CGGTGAAATA
  TCTAAGAGGG CCTCTGAGGT AGCTGGTTAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325064828	CHEV_15_92832494	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238978452					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:92899944 () rs orientation: forward

Symbol	Name	Function Class
Gm30085	predicted gene, 30085	within coordinates
Gm62083	predicted gene, 62083	within coordinates
Rr391110	regulatory region 391110	within coordinates
Rr508114	regulatory region 508114	165 bp distal
Rr508115	regulatory region 508115	14 bp distal
Rr508116	regulatory region 508116	within coordinates
Rr508117	regulatory region 508117	126 bp proximal
Rr508118	regulatory region 508118	349 bp proximal
Rr508119	regulatory region 508119	1365 bp proximal
Tssr132761	transcription start site region 132761	141 bp upstream