rs238981938 SNP Detail

Summary

• ID
  rs238981938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96244376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTGACG ATTTTAAGTA
  AAAAGCGCCC GTCTCGGCAG AACGCCCCAC AGGCACATAG ATGTCCAAAC TGATGTTGAG
  TCTGCATGTA GGCGGCCTCT CAATGGCAGA CCCTACATGT CTAGAGACAC AGCCTTCAAG
  GCTGAGGATT TAGTTTGTCT TCCTCTCACA CACATTCTTA ATGTCTCTGT GCGGGGTGGG
  R
  TCTTCTGCAC TGGTTTAGGA TTACTATAAT GAACTCAAAA TTTACTATGT GAGCACAAGG
  ATAAGTACTG ATTCTATAAA GAGGTCTTGC TTAGTTCTTC CTAGGCTAAC CTCAACTTTA
  TCCTTACTCC CACTTTGTAC AGGTTCTCTG CTTAAATGCA TATTACCAAG GAAACCTATA
  TCCTAACACA AAGGTTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323108150	CHEV_9_96262742	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238981938					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96244376 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	within coordinates
Cpgi22162	CpG island 22162	1180 bp proximal
Gm68867	predicted gene, 68867	within coordinates
Rr684945	regulatory region 684945	671 bp proximal
Tssr86601	transcription start site region 86601	1601 bp upstream
Tssr90956	transcription start site region 90956	1976 bp downstream