rs238984435 SNP Detail

Summary

• ID
  rs238984435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGACGA CGGAACGGAC
  AACTAGAACA TCCTTGGCAA CTTCTACAGT CACTCTGGTT CTCTTCGCTC TGCTCTCCAT
  CGCTCTTCTC CCTAAATAGA AGCCCTCTCC TACCTCTCTC CACAGCTGCC TTCTGTATTT
  CCATCCCAAC CTCCTTGAAC TTCGGAAATT AGTGTCCGGG TATCCAGTCG GTCCTCTGAA
  R
  GACCCTCACG AGGCTGTTGC CCCTGTCACC ACTCAGCACT AGGTGTTGGG CGAAGAAAGG
  TTGGTTAGCC GGAAGTGACA GGTGAGGAGG CTTCTGGACG GCTTGTGCGC AGGGTGGCAG
  CATCCCGAGG AAGGTTCCAA TCCTGTCTGG CTGGACTCTC ATCCGCTCCC CACGCCTCGG
  GTTGAGCAGA GAGTAGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647216	MGP_WTSI_3_127492374	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238984435					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647216	MGP_WTSI_3_127492374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	41 bp proximal
Cpgi13801	CpG island 13801	1182 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1663 bp downstream
Gm65225	predicted gene, 65225	937 bp downstream
Rr584859	regulatory region 584859	1142 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	342 bp proximal
Rr584862	regulatory region 584862	467 bp proximal
Rr584863	regulatory region 584863	791 bp proximal
Rr584864	regulatory region 584864	1359 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	254 bp downstream
Tssr31595	transcription start site region 31595	242 bp downstream
Tssr31596	transcription start site region 31596	209 bp downstream
Tssr31597	transcription start site region 31597	169 bp downstream
Tssr31598	transcription start site region 31598	146 bp downstream
Tssr31599	transcription start site region 31599	346 bp upstream
Tssr31600	transcription start site region 31600	410 bp upstream
Tssr31601	transcription start site region 31601	444 bp upstream
Tssr31602	transcription start site region 31602	485 bp upstream
Tssr31603	transcription start site region 31603	530 bp upstream
Tssr31604	transcription start site region 31604	647 bp upstream
Tssr31605	transcription start site region 31605	1146 bp upstream
Tssr31606	transcription start site region 31606	1344 bp upstream
Tssr31607	transcription start site region 31607	1582 bp upstream
Tssr31608	transcription start site region 31608	1650 bp upstream
Tssr31609	transcription start site region 31609	1701 bp upstream
Tssr31610	transcription start site region 31610	1810 bp upstream
Tssr31611	transcription start site region 31611	1918 bp upstream
Tssr35598	transcription start site region 35598	286 bp downstream
Tssr35599	transcription start site region 35599	370 bp downstream
Tssr35600	transcription start site region 35600	387 bp downstream
Tssr35601	transcription start site region 35601	413 bp downstream
Tssr35602	transcription start site region 35602	745 bp downstream