rs238989545 SNP Detail

Summary

• ID
  rs238989545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28527533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACCCAC CCAATGATTT
  TTTTTTTAAT TTTATTTTAT GTGCATTGGT GTTTTATGTG CCTGTGTGAG GGTGTCAGAT
  AGCCTGGAAC TGGAGTTAGA GACAGTTGTG AGCTGCCATG TGGGTGCTAG GAATTGAACC
  CGGGTCCTCT GGAAGAGCAG CTGGTGCTCT TACCCCCGAG CCATGTCTCC AGCTCCCACC
  M
  GGTGATCATT TTTGCTTCAG GTGTTTTGTT TGCAGTCTTC AGATTTCTAG TTGGTTCTTT
  GTGATGAGGC CTCAGTGACT TTCTAGATCC TCCTGCCTTG ACCTGCTGTC CAGCCTGCCT
  CTTGTTTATT CTATTTTGTC TTATATTTTT GCACATATGT GTGAGTACAT TTACGTGTGT
  GTACACATGG ATAAAGGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss370868055	MGP_WTSI_7_29613127	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs238989545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868055	MGP_WTSI_7_29613127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28527533 () rs orientation: forward

Symbol	Name	Function Class
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	933 bp distal
Rr167384	regulatory region 167384	1532 bp distal
Tssr65551	transcription start site region 65551	584 bp downstream
Tssr65552	transcription start site region 65552	476 bp downstream
Tssr65553	transcription start site region 65553	1899 bp upstream
Tssr65554	transcription start site region 65554	1979 bp upstream
Tssr65555	transcription start site region 65555	1999 bp upstream