rs238995043 SNP Detail

Summary

• ID
  rs238995043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98852437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGAGAG AAATAATATA
  CAAAGTAGTA CTTAATACTA GAGAGCTTTC TTTCTTTAGC TGTAATTCTC TCCCATCACC
  CCTCCGTGCC CGCCCCCCTA CCCCACCCTA CCTCACCCCA GAGCCTGTGT TATTTTGTCC
  CTAGAAATGA GCCATCCTTT CTAATATGGA ATTCAGAAAC TGTAAGGAGA AAGAATTGAG
  Y
  TTAAAAACTA GCTCTTTGTG TGGGCTTGTA TTTCTCCAGT CTTTTTTTTT TTTTTGGAGG
  GGGAGGGGTG ATATCAAGTA AAAAATAACT GAGATGCCAA ATTAAAAAGA GGAGCGTTTT
  ATAATATAAA AGGAAACCAT TTTGTGATGT TTTCATCCCC AGACAACTGT GCAGTGCCAG
  CCCTGCTGCA GTTTTATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395146356	MGP_WTSI_15_98784987	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238995043					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146356	MGP_WTSI_15_98784987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98852437 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	825 bp upstream
Cpgi7685	CpG island 7685	840 bp distal
Gm49450	predicted gene, 49450	1005 bp upstream
Gm56698	predicted gene, 56698	9 bp downstream
Rr370012	regulatory region 370012	1229 bp downstream
Rr404613	regulatory region 404613	785 bp downstream
Rr509236	regulatory region 509236	1289 bp distal
Rr509237	regulatory region 509237	1016 bp distal
Rr509238	regulatory region 509238	896 bp distal
Rr509239	regulatory region 509239	363 bp distal
Rr509240	regulatory region 509240	638 bp proximal
Tssr132970	transcription start site region 132970	1482 bp downstream
Tssr132971	transcription start site region 132971	787 bp downstream
Tssr136334	transcription start site region 136334	1037 bp upstream
Tssr136335	transcription start site region 136335	1023 bp upstream
Tssr136336	transcription start site region 136336	996 bp upstream
Tssr136337	transcription start site region 136337	965 bp upstream
Tssr136338	transcription start site region 136338	949 bp upstream
Tssr136339	transcription start site region 136339	897 bp upstream
Tssr136340	transcription start site region 136340	880 bp upstream
Tssr136341	transcription start site region 136341	857 bp upstream
Tssr136342	transcription start site region 136342	903 bp downstream
Tuba1a	tubulin, alpha 1A	1055 bp upstream