rs238998529 SNP Detail

Summary

• ID
  rs238998529
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151967036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCCTCCCA AGCCTCTGTG GACAGAAGGG
  GCGAGGCCGC GCCAGCTGAG AGATTGATAA AGGACCTAAA AAGATCGTCC CTGGCCAGAG
  GGCCAGTTCT TTGTGGACCC CCACAGGGCA ACCAGTTTCC TTCACTTTAG GAAGGCATAT
  W
  TTTTTCCTCA TCCCAGGCAT ACTGGGCCTT TCGTGTGCAC ACTGAATTGA TCTTTCTACA
  CTGATAGCCT TTGCGGCTCT TTTGTGCCTC TTCTGCGCGC TTCACTGCTC CTTCATTGCC
  TTAGACTCCT GAGGAATGCC AGGCCCCCAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062298	CHEV_1_153938415	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238998529					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151967036 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	mRNA-UTR
Cpgi853	CpG island 853	34 bp distal
Rr420417	regulatory region 420417	1171 bp distal
Rr420418	regulatory region 420418	670 bp distal
Tssr14207	transcription start site region 14207	1118 bp upstream
Tssr14208	transcription start site region 14208	1076 bp upstream
Tssr14209	transcription start site region 14209	1031 bp upstream
Tssr14210	transcription start site region 14210	978 bp upstream
Tssr14211	transcription start site region 14211	953 bp upstream