rs239010442 SNP Detail

Summary

• ID
  rs239010442
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:111258179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAGTTC AAGGTGTGGG
  AGGCACCATT GTTCTGGAAG CCAGTCTTGT CACTGATTGC ATGACACGAA TTCTCTTTTG
  TAAGATAAAA CATTCTTTAA CCATTAGCTC CACCTCATTA CCAGCAATTT CCATGTTTAA
  GTTTTTTTTT TTTTCCTTAA AGACTGAGAT AAATAGCACC TGTCCCTGCA GGACACTTGA
  S
  TGACGATACC CATGTGCTTC ATTTCATGTC TTCATCTCCA GTGGTCCGGA GCGCCAAGCC
  TTGCACATAT GACATTGCAA CACAAATCCT GCCCTGTTCC TCTAAGCAGA AGTCACGCTG
  ACAAAAGCCA AGGAATTACA TAATTATCAG TGTTGCTTGC TAGATAATTG TTCTTTTTAA
  ATGCTTTACT CAAAATAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323196674	CHEV_9_111331615	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239010442					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:111258179 () rs orientation: forward

Symbol	Name	Function Class
Rr192826	regulatory region 192826	579 bp distal
Rr198795	regulatory region 198795	within coordinates
Rr202628	regulatory region 202628	829 bp distal
Rr202629	regulatory region 202629	716 bp distal