rs239017978 SNP Detail

Summary

• ID
  rs239017978
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55795814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCTCGA TTTGAGGCAA
  GATCTCACTA AATTACTCAG GCCGGCCTTG AGTTAAGGAT CTGAGTGCCT CACTAGCTGG
  GATTACAGAC CTGTACCATC AAATCATTGA TTATTTGGGA GCAGAATATA ATGACCCTAG
  CACTGTTTGA TCCCTTGGAG AGTAGATGAG AGCAGAAAAG CTTGACCTTT TTCTTTTTAA
  W
  TTTTTTAAAA ATGTATGTGT GTGAATGTTT TCCCTGGCGG TGTGTGTGCC CGCACCAGCT
  GCCCACGAAG GTCAGGGAAG GGCATTGGAT TCAGAACTGG AGTTAGGTTA CAGATGTTTC
  TGACACCAGG TAGGTGCTCA GAATTGAACG CTGGTCATTT GAAAGAGCAA AAGTACTGTT
  TACTACTGAG CTGTCAAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396395759	MGP_WTSI_16_55975564	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239017978					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396395759	MGP_WTSI_16_55975564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55795814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	621 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	1590 bp downstream
Rr517155	regulatory region 517155	1729 bp distal
Rr517157	regulatory region 517157	1558 bp distal
Rr517158	regulatory region 517158	1492 bp distal
Rr517159	regulatory region 517159	344 bp distal
Tssr138799	transcription start site region 138799	1651 bp downstream
Tssr138800	transcription start site region 138800	1621 bp downstream
Tssr138801	transcription start site region 138801	1587 bp downstream
Tssr138802	transcription start site region 138802	1559 bp downstream
Tssr138803	transcription start site region 138803	244 bp downstream
Tssr141546	transcription start site region 141546	926 bp upstream
Tssr141547	transcription start site region 141547	844 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	834 bp upstream