rs239019915 SNP Detail

Summary

• ID
  rs239019915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGAGTG GTACGTGTGT
  CCCAGGACAA CTAGAGCTGT ACACAGTGAG CTCTTGTCTC AAAAAAAAAA AAAAAAAAAA
  ATCTAGAGAG AAGGCCAAAT CCAAACCAAA GCTTGAACAA GTAAACTCAA GGTCATGACA
  GTAATACAAA CCAAGGAAGG CACTGGAAAC AGGAAAGCCA CGGAGAATAC CATGGACACT
  R
  ATGCTGGTTC TTTCATGTCC TTGTCACCTC CTATGGCTAC AATACAACAA TGACCAGAAC
  CAAGTTGAGA TGGGAAGGGT TTATTGCACC TTCCAGGACA CAATGCAGGG TCAAGGTGAG
  CAAGCCAGAA AGCAGACTTC CTCCACGGTC TCTACTCTGC TCCTGCCTTG CGCTCCTTCT
  GCATTGGCAC CCTTGACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss382237246	MGP_WTSI_11_3073471	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs239019915					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237246	MGP_WTSI_11_3073471	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	887 bp distal
Cpgi2458	CpG island 2458	within coordinates
Rr441481	regulatory region 441481	1018 bp distal
Rr441483	regulatory region 441483	1252 bp distal
Rr441484	regulatory region 441484	518 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	505 bp proximal
Rr441487	regulatory region 441487	1710 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	671 bp upstream
Tssr106449	transcription start site region 106449	139 bp upstream