rs239028089 SNP Detail

Summary

• ID
  rs239028089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAACT GCCTGTCTGC
  TTCTGGGGAA GTCATTTCCT CAAAGCCACA GAAACCCAGA AGCTGCTGAC CTCTGAGAGG
  TGTGCAACTT TGTAGTGACA ACTGGCGGCG GTTGCTCTCT GCAACACAGG AGTGTGGGCA
  GAGACTAATC TGTCGCCACC CAGAGCAGAA GTGGGAAGAC TGAGCCTCCA CACTGGATCT
  R
  CCTAAACTCA CTTCAAAAGA GTCACAGGCA GGCTGGCAGG GGACGCTGGG AGGCACTAGG
  AAACCGGAGT GTTTGTTAAA TGTTTTATTC TGTAATCAAA ATAGGCAATA CAAACCAGTC
  GACTTAACAA AGAGTCATAT AAATAACTTT ATAAACTTTA CGAAGAAAAA TACCCGTGAG
  CATGGAGGCT GGGCTCCCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332291	MGP_WTSI_4_133685703	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239028089					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332291	MGP_WTSI_4_133685703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857099 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	70 bp downstream
Cpgi15028	CpG island 15028	668 bp distal
Gm68742	predicted gene, 68742	177 bp upstream
Rr601575	regulatory region 601575	509 bp distal
Rr601576	regulatory region 601576	within coordinates
Rr601577	regulatory region 601577	88 bp distal
Rr601578	regulatory region 601578	39 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1055 bp upstream
Tssr39537	transcription start site region 39537	1822 bp downstream
Tssr43868	transcription start site region 43868	1997 bp upstream
Tssr43869	transcription start site region 43869	1977 bp upstream
Tssr43870	transcription start site region 43870	1815 bp upstream
Tssr43871	transcription start site region 43871	1765 bp upstream
Tssr43872	transcription start site region 43872	1738 bp upstream
Tssr43873	transcription start site region 43873	1712 bp upstream
Tssr43874	transcription start site region 43874	1697 bp upstream
Tssr43875	transcription start site region 43875	1088 bp upstream
Tssr43876	transcription start site region 43876	1018 bp upstream
Tssr43877	transcription start site region 43877	177 bp upstream