rs239035581 SNP Detail

Summary

• ID
  rs239035581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36414376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGCCAC GACTCGCCGT
  GGCGGCGGCG AGCGGATCCC GCTAGGGAAG GAGGAGAGAG AGGGAGAGAG AGAGAGCTGA
  CGGGGGCTGT GAGTGAGCGG GAGGAGCGGG GTGTCAGCCC GGCCGGCCCG CGGGAGTGAA
  AGGCAGAGCG AACGAGGCCC CGAGCCCGCC GCGCGGCCGC CGCCTCCGCC TCCTCCCCTC
  Y
  CCTCGCGCGC GGCCCGCCCC CGCCCGCAGC CCGCCCTCCT CGCGGCTCAG CCCGCAGAGC
  CCGAGCGAGG CGCCGTTCGG CTCGCGCGCC GTCCAGAACA GGTGTGCGCG CGCCTCCCCC
  CTCCCTCCCT CCTCCTCCTC GCGCCCGCCT GCGCGCGCCG GCCTCCCTCC AGCCTGCGCC
  CTCCCTCACC TGCGGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400274445	MGP_WTSI_18_36440977	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239035581					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400274445	MGP_WTSI_18_36440977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36414376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9864	CpG island 9864			within coordinates
Gm58393	predicted gene, 58393			342 bp upstream
Pura	purine rich element binding protein A			Intron
				mRNA-UTR
Rr536081	regulatory region 536081			353 bp distal
Rr536082	regulatory region 536082			216 bp distal
Rr536083	regulatory region 536083			within coordinates
Tssr150596	transcription start site region 150596			756 bp downstream
Tssr150597	transcription start site region 150597			172 bp downstream
Tssr150598	transcription start site region 150598			25 bp upstream
Tssr150599	transcription start site region 150599			66 bp upstream
Tssr150600	transcription start site region 150600			123 bp upstream
Tssr150601	transcription start site region 150601			142 bp upstream
Tssr150602	transcription start site region 150602			188 bp upstream
Tssr152929	transcription start site region 152929			334 bp upstream