rs239040623 SNP Detail

Summary

• ID
  rs239040623
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77443130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCATC CCGGATATTG
  AATGAGCACC TGTTCGCCCT GTGCCAAGAG TAGACAACTT ACTTTATTAT ATTTTGTAGC
  TGGTAACTAC AACAAGAGTT GTAACCTTTT GGTGCGGTTA GGCAGGAAGT GAATGCCTGG
  TGTGTACTGG AGTGGCCATG CCTTCTGCCT CGGGTTAGTG GAGACAGAGG GTTATATGTT
  M
  TATTTTGGTG ACGCAGCCCA GGGGCTGTTG TCCACTAGGC AGATGCTCTA CCAGTGAGTT
  ACTTACTCTC TCCACACCCC CACAGCGGCC CCCCCCCCTT TTTTTTTAGA CAAGGTTCCT
  TTGTGGTCCA AGCTGTCCTG GAGTTTAAGA CCAGGCTGAC TTCAAACTCA AAAGAGATCT
  TCCTGTTTCT GTCTCCTGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971366	MGP_WTSI_10_77070041	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239040623					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971366	MGP_WTSI_10_77070041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77443130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1760	CpG island 1760			224 bp distal
Gm49325	predicted gene, 49325			Intron
Rr402005	regulatory region 402005			579 bp downstream
Rr434546	regulatory region 434546			715 bp distal
Rr434547	regulatory region 434547			within coordinates
Sumo3	small ubiquitin-like modifier 3			Intron
				Noncoding-Transcript-Variant
Tssr94265	transcription start site region 94265			1229 bp downstream
Tssr94266	transcription start site region 94266			1056 bp downstream
Tssr94267	transcription start site region 94267			1041 bp downstream
Tssr94268	transcription start site region 94268			643 bp downstream
Tssr94269	transcription start site region 94269			616 bp downstream
Tssr94270	transcription start site region 94270			578 bp downstream
Tssr98239	transcription start site region 98239			177 bp upstream