rs239041075 SNP Detail

Summary

• ID
  rs239041075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26496118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTTTTG TTTTTTTGAG
  ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC CGGGAACCTA CTCTGTAGAC CAGGCTGGCC
  TCGAACTCAG AAATCCACCT GCCTCTGCCT CCCAAGTTCT GGAATTAAAG GCGTGTGCCA
  CCACGCCCGG CCGTCTTTAA GTTTTAAAGG TTTATTTTAT GTGTGTGAAG TGTTTTATGT
  R
  CATGTATGTA TGCATACCAT GTGCATGCCT GGTGCCTGAG GAAGTCAGGA GACAGTGCTG
  GCAACTGAAA CTGGGTCCTC TACAAGAGCA GCAAGTGCTC TTACCCACTG AGCCATCTCT
  CCAGCTCCTG TTGGGTTTTT GAACCCACCT TCAAACTGCT TACCTAGCCG GGGATGACCT
  TGGGCTTCTA AATCTCCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353433499	MGP_WTSI_2_26461626	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239041075					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353433499	MGP_WTSI_2_26461626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26496118 () rs orientation: forward

Symbol	Name	Function Class
Agpat2	1-acylglycerol-3-phosphate O-acyltransferase 2	1689 bp upstream
Cpgi11355	CpG island 11355	1206 bp distal
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	999 bp downstream
Rr42175	regulatory region 42175	318 bp distal
Rr42176	regulatory region 42176	1083 bp proximal
Rr56481	regulatory region 56481	1117 bp distal
Tssr16812	transcription start site region 16812	1600 bp downstream
Tssr23136	transcription start site region 23136	1932 bp upstream
Tssr23137	transcription start site region 23137	1879 bp upstream
Tssr23138	transcription start site region 23138	1854 bp upstream
Tssr23139	transcription start site region 23139	1797 bp upstream
Tssr23140	transcription start site region 23140	1676 bp upstream
Tssr23141	transcription start site region 23141	1481 bp upstream
Tssr23142	transcription start site region 23142	1708 bp downstream
Tssr23143	transcription start site region 23143	1879 bp downstream
Tssr23144	transcription start site region 23144	1960 bp downstream