rs239043341 SNP Detail

Summary

• ID
  rs239043341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59437387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaactcact atgtagctca gactggcctg
  gaactcacgg caggcaatct ttctacctAT CTCACACATT GGATTCCTTT TTACACACAT
  TTCTAAAGAC CTCTTACTAT GGAATGGGGC ACCCCTCCCC TTTTCCGAAA TCCAAGGAAC
  Y
  GCTCAGCTTG TCTCATGCAT AATGGCTGCC CAGTAAAACA CAGTTGTCCT CTCCTCTGAC
  CAGTACACCT TCTCAGAGCA CTTGACACGT TCTGCTATTA TGTGGGCAGA CTTCGCCTCA
  TTTTCCTGTT TGAATCCTCC GTGTCAGGTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141024	CHEV_4_59450259	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239043341					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59437387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	502 bp proximal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	766 bp upstream
Tssr41933	transcription start site region 41933	903 bp downstream
Tssr41934	transcription start site region 41934	958 bp downstream
Tssr41935	transcription start site region 41935	1263 bp downstream