rs239047390 SNP Detail

Summary

• ID
  rs239047390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105926368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGTTC AAGGCCAGCC
  TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT GTCTCGAAAA
  AACAAAACAA AACAAAAAAG ACCTGTTCCG TAAAATAGAT AGATAGACCT CCGCTAAGAT
  TGTACTACAA GACCATTATT AACCCACTGA AAAATCAGAA ATGATGTAAC CAATAGAAAA
  Y
  TATGGACCAA ATTTCCTGAT ATGCACAGAA ATAAAACGTT TCAATAAAAT ACACACCTAG
  GTATCCAGTT AATTTTCTTT TAACTTTTAT TATTTTGAAA CAGATTCTCA ACTAGCCCAG
  GCTGCCTCTA ATTGGCTCTG TAGCCCAGGA TAAGAGTGAC TTTCTGGTTC TCCTGACTCT
  ACCTCCCAAG AGCTGGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384580824	MGP_WTSI_11_105896856	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239047390					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384580824	MGP_WTSI_11_105896856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105926368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4013	CpG island 4013	1024 bp proximal
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	1730 bp distal
Dcaf7	DDB1 and CUL4 associated factor 7	1330 bp upstream
Gm72314	predicted gene, 72314	69 bp downstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	993 bp downstream
Rr403032	regulatory region 403032	1068 bp upstream
Tssr105477	transcription start site region 105477	1940 bp downstream
Tssr105478	transcription start site region 105478	1315 bp upstream
Tssr105479	transcription start site region 105479	1325 bp upstream
Tssr105480	transcription start site region 105480	1386 bp upstream
Tssr105481	transcription start site region 105481	1418 bp upstream