rs239052573 SNP Detail

Summary

• ID
  rs239052573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103289709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTTTTAAA ACTTTTTttt ttattttgaa
  agaagttcag acttttggaa agattccaag aataggccaa agaatcctca tactgcattt
  atatggattt tctcaaatat aaatattttt tttaccacat ttgcattCTT GTACCGAGTG
  Y
  TTTGTTTTCT CTTTCCCCCT GAGCCATTGA GAAGCAGATC TGCACACAAT GCTCTTTCTA
  TCCACCAGCA CCTCAGGGGC AGGGGCGGTT TCTAAAAGCA GAGATGCAGG TGTAGAATAC
  ATCGCCCGAG CTGTTAACAG TGTCCCCAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323161177	CHEV_9_103314840	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239052573					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103289709 () rs orientation: forward

Symbol	Name	Function Class
D9Mgc25	DNA segment, Chr 9, MRC UK Mouse Genome Centre 25	1779 bp proximal
D9Mit242	DNA segment, Chr 9, Massachusetts Institute of Technology 242	857 bp proximal
Gm47328	predicted gene, 47328	within coordinates
Gm69201	predicted gene, 69201	within coordinates
Rr198513	regulatory region 198513	109 bp distal
Rr198514	regulatory region 198514	92 bp proximal
Rr207103	regulatory region 207103	493 bp proximal