rs239056057 SNP Detail

Summary

• ID
  rs239056057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACACTCTT CACTTTGGGG
  GCCCTTGCCA CTAGGACTCT TCACTTTGAG GGTTGAGTGT GGTAGGCAGA GGTCCATCCT
  GATTCTTATT CACCTATGTT ATTATTATTA GGCGATTTAA AACTCGAAGC TTCCCTCAAC
  GTCCAAACTG CAAGGGCAGA GGGAAGGCGG GGCTTGGGGA CCTTCCTGGT CTCTCTTCTG
  Y
  GCCTGCAGCG TGGAGCCTCA GGCTGTACCC TCTTAGCTAG GGTCAATTTT TCTCAGGGTG
  CCTTTTCCCA CCCAGTGAGG ATGGGGGCTC GTTTCTCGAG TCAGATGAGC ATTCTTCGGG
  TAAAGAGGAC GAAATAACCC GCCGAGCCAA CCTGCGAGCC TGTTTTCTTT GAATAATTGC
  CTGGCCGATG CGAAATGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323137459	CHEV_9_99777523	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239056057					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759157 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	634 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	380 bp downstream
Rr685463	regulatory region 685463	1376 bp distal
Rr685464	regulatory region 685464	945 bp distal
Rr685465	regulatory region 685465	444 bp distal
Rr685466	regulatory region 685466	679 bp proximal
Sox14	SRY (sex determining region Y)-box 14	934 bp upstream
Tssr91083	transcription start site region 91083	911 bp upstream
Tssr91084	transcription start site region 91084	892 bp upstream