rs239062744 SNP Detail

Summary

• ID
  rs239062744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23892408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTCCCT CTGCCTTCCC
  AGTGCTAGGA TCGTAAATGT GCCACCACCT CCAACGGCGC AAATTTTTTT AAGTGGCTCT
  ATTATCCCGC ACAGGAAAAT GTACCAACAT CTAATCCTTC AGTCACTATT AGATCTCAAG
  GTTCCGGATC ACTTTTCGTG GGCTCAGGGT ACAAGTCCCA CAAATCACCT ATGAACACTG
  R
  GTATCCTGGA ACACTCCAGG GGTAGATGTC AGAGCAAGAC TACAAACCCC AGAAGGCACT
  GTGCATACAC TCGACTCACC TGACCCAGAG GCACCGCGAG CGGTGCGGCA TGCTCCATCT
  TGAGAACTAC AAGTCCCAGA GGGCTCTACG TGTGACACAA TCTCTCGACG CACGACACAA
  CCTCTCGATT CCGGACGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840158	MGP_WTSI_17_23810401	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239062744					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840158	MGP_WTSI_17_23810401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23892408 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	within coordinates
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	162 bp upstream
Rr329688	regulatory region 329688	1008 bp distal
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	10 bp upstream
Thoc6	THO complex 6	within coordinates
Tssr142940	transcription start site region 142940	147 bp upstream
Tssr142941	transcription start site region 142941	464 bp upstream
Tssr142942	transcription start site region 142942	556 bp upstream
Tssr146635	transcription start site region 146635	123 bp downstream
Tssr146636	transcription start site region 146636	391 bp downstream
Tssr146637	transcription start site region 146637	1625 bp downstream