rs239063830 SNP Detail

Summary

• ID
  rs239063830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136802972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTGTT AAAAATTCTA
  ACATAAAAAA GACTTAATTT TCTCCTGCTA GCCAGTCAAG TATGAGGAGA AATGTGTTAA
  GCAGCTTACA CTCTCAACAT TCTAACCATG AGTCCATTTT AAGAATTCTA CATGACCTCA
  CACACCCCAC TCTACCAACG CTGAACTTAG GCCACCATGA AAGAGTCTGC CAGTTTTAAC
  Y
  CTTCTACTTC TTCCTTCCGT ACTTACGGGC TTGGTCTGTG GGGTTCATAA ACTTCCCACT
  CTTGGTGGAG GATGTTGATC TTCGTCCCAT GGTGACAATT TATATGATTT ACTTCTTCAT
  TAAAAAAAAA AAAAACTGGA AAGAAAAGAT ATAAAGAACT CAGTTTTGCT GTATGTGTAA
  AAAGACTTCC TTTTACGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370220279	MGP_WTSI_6_136774495	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239063830					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370220279	MGP_WTSI_6_136774495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136802972 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	1652 bp upstream
Cpgi18110	CpG island 18110	1595 bp proximal
Rr380176	regulatory region 380176	1050 bp upstream
Rr640072	regulatory region 640072	1309 bp proximal
Tssr59337	transcription start site region 59337	1771 bp upstream
Tssr59338	transcription start site region 59338	1787 bp upstream
Tssr59339	transcription start site region 59339	1825 bp upstream
Tssr59340	transcription start site region 59340	1856 bp upstream
Tssr63834	transcription start site region 63834	47 bp downstream
Tssr63835	transcription start site region 63835	119 bp downstream
Tssr63836	transcription start site region 63836	1740 bp downstream
Tssr63837	transcription start site region 63837	1773 bp downstream
Tssr63838	transcription start site region 63838	1792 bp downstream
Tssr63839	transcription start site region 63839	1846 bp downstream
Wbp11	WW domain binding protein 11	within coordinates