rs239064948 SNP Detail

Summary

• ID
  rs239064948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGTCTG ACAGCTACAG
  TGTACTCACA TACATACATA CATACATACA TACATACATA CATACATACA TCTTAGAAAA
  AAAAACCCAT AGGGTTTCAA TCTGAATAAT AAAATACTAT AATGACATGA TCGTAACTTC
  ACACAATTGG GAACACGCTG TTTCACACTT TGTTATTGAT TAGCTGAAAT GCCTTAGATG
  K
  CAACATTTGC AAGCTAAAAG ATTCTAAGAC ACTTGCTAAG TTCCCTATCA TCAAAACTAT
  TTGACACTTT GTTACTGATT AACTGAAATG TCTTAGCCAC TTTTGCAAGC TAAAGGATCC
  TAGGATAGCG AGTAAATTGC CTATCGCCAA TTTCAATTCA AAACTTCTAA AGCATGCCTT
  TCCTTAAAAT CCAATCTCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385303679	MGP_WTSI_12_21378274	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239064948					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385303679	MGP_WTSI_12_21378274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422414 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	774 bp proximal
Gm49586	predicted gene, 49586	1260 bp upstream
Rr463710	regulatory region 463710	1819 bp distal
Rr463711	regulatory region 463711	1432 bp distal
Rr463712	regulatory region 463712	1005 bp proximal
Rr463713	regulatory region 463713	1116 bp proximal
Rr463714	regulatory region 463714	1130 bp proximal
Rr463715	regulatory region 463715	1271 bp proximal
Rr463716	regulatory region 463716	1310 bp proximal
Rr463717	regulatory region 463717	1798 bp proximal
Tssr112932	transcription start site region 112932	1277 bp upstream
Tssr112933	transcription start site region 112933	1839 bp upstream
Tssr115856	transcription start site region 115856	1068 bp downstream
Tssr115857	transcription start site region 115857	1088 bp downstream
Tssr115858	transcription start site region 115858	1113 bp downstream
Tssr115859	transcription start site region 115859	1137 bp downstream
Tssr115860	transcription start site region 115860	1193 bp downstream