rs239066594 SNP Detail

Summary

• ID
  rs239066594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAATTCA GCAAGATCCC
  CATCTCAAAA ACAGAAAGTT GTCTTTCAAG GGAAATAGTA CTCTAACTTT CAAAGCGTAA
  TCACAGAACA CACACACACA CACACACACA CACACACACA CATTTTTAAA ATCTATTGTT
  TGAGTTTAGA AACAGTGTAT AGCAGGTTAG TAAAATGTTT TCTTTTTTGG TGTAGAGGGT
  R
  ATGAGGCTTC CTGTGACTTT AGACTTAACT CTCCAGGAAA ACACCTTATG AACTTGTAAT
  TATTATTCTG GGACGGAGAA GGAAAAATAA ACGTAAAATA ACAAACTTCA AAGTTGAAAG
  CAAAGTTTTT TGTTTTGTTT TGTTTTGTTT TTTTCTTTTT TTTGTCTCTC AACAGACATT
  AATGTCATAA GACATTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895801	CHEV_3_116296902	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239066594					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	492 bp proximal
Rr397965	regulatory region 397965	779 bp upstream
Rr583746	regulatory region 583746	466 bp proximal
Rr583747	regulatory region 583747	763 bp proximal
Rr583748	regulatory region 583748	844 bp proximal
Rr583749	regulatory region 583749	1037 bp proximal
Rr583750	regulatory region 583750	1205 bp proximal
Sass6	SAS-6 centriolar assembly protein	998 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	975 bp upstream
Tssr35316	transcription start site region 35316	832 bp downstream
Tssr35317	transcription start site region 35317	864 bp downstream