rs239067009 SNP Detail

Summary

• ID
  rs239067009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90173199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT GCTCAGCCAC CTCCCCCGCG
  S
  CGCGCCCTCT GCCCTAGCCC CGACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837693	CHEV_3_90069814	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239067009					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90173199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13456	CpG island 13456	within coordinates
Crtc2	CREB regulated transcription coactivator 2	1767 bp downstream
Dennd4b	DENN domain containing 4B	within coordinates
Gm65083	predicted gene, 65083	91 bp downstream
Rr397807	regulatory region 397807	815 bp downstream
Rr580320	regulatory region 580320	697 bp distal
Rr580321	regulatory region 580321	773 bp distal
Rr580322	regulatory region 580322	within coordinates
Rr580323	regulatory region 580323	475 bp distal
Rr580324	regulatory region 580324	494 bp proximal
Rr580325	regulatory region 580325	633 bp proximal
Tssr30184	transcription start site region 30184	904 bp downstream
Tssr30185	transcription start site region 30185	27 bp upstream
Tssr30186	transcription start site region 30186	63 bp upstream
Tssr30187	transcription start site region 30187	600 bp upstream
Tssr30188	transcription start site region 30188	615 bp upstream
Tssr34202	transcription start site region 34202	317 bp upstream
Tssr34203	transcription start site region 34203	501 bp downstream