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rs239078828 SNP Detail
Summary
  • ID
    rs239078828
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:79231956 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTTGACTCT TTGAACCCTC
    ATTGAGACTA CTTGGGATGG AGGGAAAAGT TTTGTAGTTT AGGAAGGTTG CTTTTTATTC
    GCTGAGTTTT CCACACATAA AATTCTAAGG CTGATGAGTA GACAACCCAC ACATAGCCTT
    TTGTCCATGA GAACTAGTTT AATTTGATGC TATCTACAGA TAGCTGGGGC TGGTTTAAAG
    R
    ATGGTTGCTT TTTGTTGCAG TTCTGCCAGG GGGTGTCCTC TAATGAGAGA ATTGTTTAGA
    ATTGAACCAA TCTCTTTTGT TTATTGGGTT TAATCACAAA ACTGATTATG GGAGCTGACA
    GGTAGGGGAA GGGTTTCTTC TTTAATTTGA CCAGCAGACA TTTTTTTATA GGACTCAATC
    TTTTGACCTA TCCGACAGAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383977236 MGP_WTSI_11_79154632 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239078828 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss383977236 MGP_WTSI_11_79154632 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:79231956 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi3366 CpG island 3366 841 bp distal
Gm57411 predicted gene, 57411 1510 bp upstream
Gm73396 predicted gene, 73396 463 bp upstream
Gm73418 predicted gene, 73418 1471 bp downstream
Nf1 neurofibromin 1 within coordinates
Rr247290 regulatory region 247290 within coordinates
Rr402772 regulatory region 402772 1469 bp downstream
Tssr3597 transcription start site region 3597 1490 bp downstream
Tssr103438 transcription start site region 103438 1495 bp downstream
Tssr103439 transcription start site region 103439 1437 bp downstream
Tssr103440 transcription start site region 103440 1217 bp downstream
Tssr109477 transcription start site region 109477 1831 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory