rs239081744 SNP Detail

Summary

• ID
  rs239081744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164754984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGGTGGAT CTCTGTGAGT
  TCAAAGCCAG CCTGGTCTAC AGAGTTAGTT TCAGGACACA AAAACCGTGT ACTAAAAAAA
  AAAAAAAAAA AAAAAAAAGC GGGGCGGTGA TGGCACACTC CTTTAATCCC AGCACTTGGG
  AGGCAGAGGC AGGCGGATTT CTGAGTTCGA GGCCAGCCTG ATCTACTGAG TGAGTTCCAG
  R
  ACAGCCAGGG CTACACAGAG AAACCCTGTC TCAAAAAATA AACAAACAAA AAAAAAAGAG
  GAGAAGAAAA ATGAATTCAG TGAAAAGGAC AAGTGGCTTT GAGTTATCAC TAGCACCTGG
  ACACAAGGGC TCCTACGCTC TTGTCACAGA AAGTTCTCCC TTCCTCGTGT TTCCTCTTTG
  ATAGAAATAG ACCAAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443522	MGP_WTSI_2_164738564	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239081744					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443522	MGP_WTSI_2_164738564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164754984 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	131 bp downstream
Cpgi12677	CpG island 12677	699 bp distal
Rr367365	regulatory region 367365	847 bp downstream
Rr569761	regulatory region 569761	1670 bp distal
Rr569762	regulatory region 569762	1715 bp distal
Rr569763	regulatory region 569763	1318 bp distal
Rr569764	regulatory region 569764	1334 bp distal
Rr569765	regulatory region 569765	817 bp distal
Rr569766	regulatory region 569766	1146 bp distal
Rr569767	regulatory region 569767	55 bp proximal
Tssr21686	transcription start site region 21686	1609 bp downstream
Tssr27593	transcription start site region 27593	1854 bp upstream
Tssr27594	transcription start site region 27594	1825 bp upstream
Tssr27595	transcription start site region 27595	1765 bp upstream
Tssr27596	transcription start site region 27596	1481 bp upstream
Tssr27597	transcription start site region 27597	1456 bp upstream
Zfp335	zinc finger protein 335	mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand	within coordinates