rs239091725 SNP Detail

Summary

• ID
  rs239091725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7472949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTAAA GGAAAAAAAA
  AAGAAGAGTC AACAGTAGTG TTTGAAGAAT TTTTTAGCAA ACCCCAGTCT TCAAATTTGA
  GTACGAAGTG GAATGTTTTG CAAAAGGTGA AGAAAAAAAA AAAAAAAAAA AAAAAAACCC
  CTAGCAGTCT AAAACGTCAT GGTTCTCAGT TTTGTTTTGG AGAAGTGGAG TTAAGTAAAA
  Y
  CTACGTTAAG GATTTGTACT CTATGTCAGT ATTCAGCTTA CATACAAACT GCAACATCAA
  ATGAGGGCTG TTTTGCTTCC TACGAAAACC AGCTTGTATT CTAGAAATTC CTGTGCAGCT
  TTTACATGCG TGAGGGGATG TATGGGTGAA AAACATTTTC ACCTAGTGAA GCATAAGGCC
  AATACCAACA TTGTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401693411	MGP_WTSI_19_7570074	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239091725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401693411	MGP_WTSI_19_7570074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7472949 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	within coordinates
Cpgi10560	CpG island 10560	509 bp distal
Gm58988	predicted gene, 58988	710 bp upstream
Rr543689	regulatory region 543689	1521 bp distal
Rr543690	regulatory region 543690	1136 bp distal
Rr543691	regulatory region 543691	220 bp distal
Rr543692	regulatory region 543692	642 bp distal
Tssr154754	transcription start site region 154754	1553 bp downstream
Tssr154755	transcription start site region 154755	1516 bp downstream
Tssr154756	transcription start site region 154756	1320 bp downstream
Tssr154757	transcription start site region 154757	1122 bp downstream
Tssr154758	transcription start site region 154758	1110 bp downstream
Tssr154759	transcription start site region 154759	1078 bp downstream
Tssr154760	transcription start site region 154760	986 bp downstream