rs239092182 SNP Detail

Summary

• ID
  rs239092182
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:94562735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAAGTGT TTGTCTTTTC
  TGGAGGAAAG GAGACGAATC ATAGCACAGA GCCTCTGCCT TAAACGGTTC ATTGTGTATC
  CAAGGTCTGA AGGATGCGGG CTGTCATAGG ACTGGCTCCT GATACCGCGC GGCTCACACT
  ATGTGAGCTG CACTCAGGTG AGAGAGATCT GTGTACACGG GCTCCGGGCT CCGATAGAGC
  R
  TATGTTTGCC AAGGCGAGAC CCAAGGACCT TTTTCAGGTA CTGGGCGCTC TGAGAGTAAA
  TCTCTGTCCT GGGCTTGTGT AGAGCTGAGG GAAGTCAAGA TTCTTCTCCC CACTCCAGGG
  GTTCAGACAC TCAGGCTTGA CAAAGCTCTC ATGTTTCTTA ATTGCCGATT GTCTGAGAAG
  GAAATGCCAA CTCCTCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323093474	CHEV_9_94581101	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239092182					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94562735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr383780	regulatory region 383780			within coordinates
Rr684730	regulatory region 684730			within coordinates
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9			Intron
				Noncoding-Transcript-Variant