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rs239099570 SNP Detail
Summary
  • ID
    rs239099570
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr14:69586399 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCATTTTAG ATTTATGTGT
    TTATCTGGCT AAACTTATGA ACTGGGATTC CCTTTTGGGA AAAGGCGGGT GTTTTTGTAA
    TACTCTTAAG AAAGGGGGGA GATGTGTGTA TATTATAATA CAGGAGTATC ATAACCAGCA
    GGGCTTCATT CTCATCAAGT CATTTAATAG TGATGCACTG CATAACCAAA CAGCAACCTG
    S
    CGCATGCTCA GCAGAGCCAC CAGCAGCCAG GAAGCAGGGG GAGAGCATGC TGAACTCTGG
    TCAGGTGAGG CCAGGTCTCA TCCAAGCGTG TTACTTTAAA ATCTGTTTCT TTGGAATTTC
    AGGATTGGCA TTTCCTGTCT CTTTCCTGCC TCTTGGCATT TTAGCATCTC TCCAGTGGGC
    TGTCCTCGAA TTCTGAACAC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SWR/J
WSB/EiJ
ss391449613 MGP_WTSI_14_69967007 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SWR/J
WSB/EiJ
rs239099570 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss391449613 MGP_WTSI_14_69967007 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:69586399 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 Intron
Gm27221 predicted gene 27221 within coordinates
Gm53864 predicted gene, 53864 1462 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory