rs239102691 SNP Detail

Summary

• ID
  rs239102691
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAGGAG CACAATCCAA
  ACTTTCTCAA GGCAACGATT GGCTAAGCAG CTCTGGTTAG CAAACTCCCT GTTTTTTTTT
  CCCCTGGGGG AGGGGAATCA ATGGATTTAG CCCTCCCTCG CAGACCACCC AAGATACAGG
  GTTGAAGGAA AACTGGGTGA CTTTTCAGCC AAATCTCTCT CCTAAGAAAT GCGCGTTCTC
  M
  GAGTTGTTTG GAGTGCTGAC CAGGAAGACA GGGCATACAT AATCAGAAGG AAAATGGAAA
  GTTCCTGGAG GCTGCTTCCA AAATGGCAAG CTGGGAAGAA AAGACAGTTC TGTAGAATAA
  GCTGAGGACA CCAGACACGG ACACAAAGAC ACACGATAGG GTGGAAAGAC ACAGGACACA
  CAGGACCATT AAGGGAAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313602	MGP_WTSI_9_40264201	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239102691					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313602	MGP_WTSI_9_40264201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	249 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1191 bp distal
Rr676840	regulatory region 676840	362 bp distal
Rr676841	regulatory region 676841	760 bp distal
Tssr84449	transcription start site region 84449	1295 bp downstream
Tssr84450	transcription start site region 84450	706 bp downstream
Tssr84451	transcription start site region 84451	1039 bp upstream
Tssr84452	transcription start site region 84452	1067 bp upstream
Tssr84453	transcription start site region 84453	1808 bp upstream
Tssr88934	transcription start site region 88934	1232 bp upstream
Tssr88935	transcription start site region 88935	1181 bp upstream
Tssr88936	transcription start site region 88936	1160 bp upstream
Tssr88937	transcription start site region 88937	1096 bp upstream
Tssr88938	transcription start site region 88938	839 bp upstream
Tssr88939	transcription start site region 88939	804 bp upstream
Tssr88940	transcription start site region 88940	772 bp upstream
Tssr88941	transcription start site region 88941	483 bp upstream
Tssr88942	transcription start site region 88942	468 bp upstream
Tssr88943	transcription start site region 88943	440 bp upstream
Tssr88944	transcription start site region 88944	392 bp upstream
Tssr88945	transcription start site region 88945	375 bp upstream
Tssr88946	transcription start site region 88946	279 bp upstream
Tssr88947	transcription start site region 88947	250 bp upstream
Tssr88948	transcription start site region 88948	220 bp upstream
Tssr88949	transcription start site region 88949	856 bp downstream